Core Entities
- Crop — plant asset being analyzed.
- Parameter — growth/handling variable (light, EC, pH, stress, harvest timing).
- Nutrient — measured compound or antinutrient outcome.
- Claim — extracted directional statement tied to a source span.
Research Operating Console
How To Read This Engine
This UI separates collection depth from finding quality. A paper can appear in references with only title/abstract ingestion; full-text depth is tracked explicitly and never assumed.
1. Collect
2. Link Entities
3. Extract Claims
4. Score Evidence
5. Build Hidden Links
First-Timer Field Guide
Depth Signals
- full_text — body text ingested (best depth).
- abstract_only — title + abstract only.
- title_only — title-level metadata only.
Direction + Confidence
- Direction — positive / negative / nonlinear / undetermined.
- Confidence — heuristic extraction confidence, not statistical significance.
- Unknown direction — entities found but no explicit increase/decrease signal.
Lane Navigator
- claim_yield — scanned lane produced claims.
- scanned_no_claim — scanned but no valid triple extracted.
- not_scanned — queued in plan, not run yet.
Control Panel
idle
Launch and monitor local research cycles from the UI. Environment overrides are optional and apply only to runs started here.
Pre-Scan Gate
Loading gate checks…
Run Status
No control-panel run yet.
Foundation Structure (v1 Freeze)
Hardcoded baseline for ontology and UI navigation. Theme scans are selected later.
Crops
- broccoli_microgreen
- radish_microgreen
- butterhead_lettuce
- spinach
- kale
- basil
- papaya
- passion_fruit
- raspberry
Nutrients
- iron_non_heme
- folate
- magnesium
- calcium
- potassium
- vitamin_c
- vitamin_k
- beta_carotene
- zinc
- selenium
- iodine
- glucosinolates_total
- polyphenols_total
- chlorophyll_total
- oxalates_total
- phytates_total
- nitrates_total
Parameters
- ppfd, dli, spectrum_red_blue_ratio, photoperiod, uvb_intensity
- substrate_ec, substrate_ph, soil_moisture, soil_temperature
- air_temperature, root_zone_temperature, vpd, relative_humidity
- substrate_selenium, selenium_speciation, substrate_sulfur, substrate_iodine
- substrate_organic_matter, soil_mineral_content, micronutrient_solution
- nitrogen_form_ratio, harvest_stage, post_harvest_window
Theme Pods (Deferred)
- Theme A: high-consumption leafy response maps
- Theme B: trace mineral biofortification (selenium/iodine)
- Theme C: bioavailability quality layer (pairing + inhibitors)
Scan Snapshot
Topline counters across coverage, link depth, and ingestion depth.
Coverage and Diversity
Coverage shows where claims are currently concentrated. High concentration in a few entities usually means query/extraction imbalance.
Claims by Crop
Claims by Parameter
Claims by Nutrient
Research Depth
Undetermined direction means the sentence mentions the factor/nutrient context but does not state increase or decrease. Confidence bands are heuristic tiers, not p-values.
Direction Distribution
Direction Signal Detail
Confidence Bands
Papers by Year
Reference Ingestion Depth
Deficiency Coverage States
Round 1 Auto Runs
Scripts
Commands
Pull Navigator (Crop x Parameter x Nutrient)
0 rows
Use this table to identify where retrieval happened but extraction still failed. Those rows are the best candidates for algorithm refinement.
Lane Status
Lane Claims by Crop
| Status | Crop | Parameter | Nutrient | Hits | Fetched | Claims | Order |
|---|
Hidden Links (Second/Third Order)
Top Paired-Density Links
| Crop | Nutrient Pair | Relationship | Score |
|---|
Third-Order Candidates
| Crop | Triplet | Triad Score |
|---|
Multi-Factor Parameter Links
| Crop | Nutrient | Parameter Pair | Score |
|---|
Human Deficiency Priority Layer
| Nutrient | Tier | Coverage State | Evidence Claims | Priority Score | Modern Gap Signals |
|---|
Claims
0 rows
Claims are sorted by confidence, then grouped by crop/parameter/nutrient. Treat low-confidence rows as review candidates, not conclusions.
| Crop | Parameter | Nutrient | Direction | Effect | Confidence |
|---|
Paper Hits
0 rows
Tabs and depth labels distinguish metadata-only retrieval from deeper ingestion.
Chars column format: total ingested | abstract chars | full-text chars.
| Year | Source | Source ID | Title | Depth | Text Mode | Chars | Link |
|---|